Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs7962423 | chr12:104710910 | G/A | 1.12E-12 | 176 | 1.37 | 15.8 | 15.53 | KM Plot |
| PAAD | rs79655227 | chr1:227285708 | T/C | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs79662311 | chr2:128533053 | G/T | 7.9E-10 | 178 | 15.62 | 12.6 | 2.2 | KM Plot |
| PAAD | rs7969143 | chr12:104664987 | G/A | 7.54E-13 | 178 | 1.37 | 15.8 | 15.43 | KM Plot |
| PAAD | rs7969351 | chr12:104665387 | A/G | 7.54E-13 | 178 | 1.37 | 15.8 | 15.43 | KM Plot |
| PAAD | rs7969380 | chr12:104665129 | G/A | 7.54E-13 | 178 | 1.37 | 15.8 | 15.43 | KM Plot |
| PAAD | rs7975319 | chr12:51981693 | G/T | 0 | 178 | 15.4 | 17.05 | 1.03 | KM Plot |
| PAAD | rs79753724 | chr11:34772616 | T/A | 3.06E-6 | 177 | 15.67 | 11.13 | 3.67 | KM Plot |
| PAAD | rs79766410 | chr1:227289103 | T/C | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs79773617 | chr1:227238308 | T/G | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs79878493 | chr11:35015437 | G/A | 2.8E-6 | 178 | 15.82 | 12.17 | 3.67 | KM Plot |
| PAAD | rs79892036 | chr1:227404012 | T/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs7989917 | chr13:28071271 | G/A | 6.83E-7 | 177 | 15.3 | 16.6 | 3.5 | KM Plot |
| PAAD | rs79946709 | chr11:68462073 | C/T | 9.47E-10 | 177 | 15.57 | 14.02 | 2.2 | KM Plot |
| PAAD | rs80003444 | chr17:12902109 | G/T | 0.000141 | 178 | 16.08 | 15 | 7.87 | KM Plot |